HL_5J5B_191

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_191 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0468

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J5B|1|DA|U|2356
5J5B|1|DA|G|2357
5J5B|1|DA|A|2358
5J5B|1|DA|C|2359
5J5B|1|DA|G|2360
5J5B|1|DA|G|2361

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DM

50S ribosomal protein L15

Chain DX

50S ribosomal protein L27