HL_5J5B_209

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

5J5B|1|CA|U|958, 5J5B|1|CA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_209 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.0926

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J5B|1|CA|PSU|955
5J5B|1|CA|G|956
5J5B|1|CA|C|957
5J5B|1|CA|U|958
5J5B|1|CA|A|959
5J5B|1|CA|A|960
5J5B|1|CA|C|961
5J5B|1|CA|G|962

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CN

50S ribosomal protein L16