HL_5J7L_062

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

5J7L|1|BA|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_062 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.0255

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5J7L|1|BA|G|1515
5J7L|1|BA|2MG|1516
5J7L|1|BA|G|1517
5J7L|1|BA|MA6|1518
5J7L|1|BA|MA6|1519
5J7L|1|BA|C|1520

Current chains

Chain BA

16S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA