HL_5J7L_078

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

5J7L|1|CA|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_078 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.0228

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5J7L|1|CA|G|543
5J7L|1|CA|C|544
5J7L|1|CA|U|545
5J7L|1|CA|U|546
5J7L|1|CA|A|547
5J7L|1|CA|G|548
5J7L|1|CA|G|549
5J7L|1|CA|C|550

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CK

50S ribosomal protein L13

Chain CS

50S ribosomal protein L21