HL_5J7L_108

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

5J7L|1|CA|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_108 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.0643

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

5J7L|1|CA|C|1806
5J7L|1|CA|G|1807
5J7L|1|CA|A|1808
5J7L|1|CA|A|1809
5J7L|1|CA|A|1810
5J7L|1|CA|G|1811

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CY

50S ribosomal protein L28