HL_5J88_111

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5J88|1|CA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_111 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0926

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5J88|1|CA|G|1949
5J88|1|CA|G|1950
5J88|1|CA|U|1951
5J88|1|CA|A|1952
5J88|1|CA|A|1953
5J88|1|CA|G|1954
5J88|1|CA|U|1955
5J88|1|CA|U|1956
5J88|1|CA|C|1957

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CL

50S ribosomal protein L14