HL_5J88_199
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5J88|1|DA|G|2751, 5J88|1|DA|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J88_199 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.0457
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
5J88|1|DA|C|2745
5J88|1|DA|U|2746
5J88|1|DA|G|2747
5J88|1|DA|A|2748
5J88|1|DA|A|2749
5J88|1|DA|A|2750
5J88|1|DA|G|2751
5J88|1|DA|C|2752
5J88|1|DA|A|2753
5J88|1|DA|U|2754
5J88|1|DA|C|2755
5J88|1|DA|U|2756
5J88|1|DA|A|2757
5J88|1|DA|A|2758
5J88|1|DA|G|2759
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D5
- 50S ribosomal protein L36
- Chain DG
- 50S ribosomal protein L6
- Chain DK
- 50S ribosomal protein L13
Coloring options: