HL_5J88_214

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_214 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.0642

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5J88|1|DA|G|1091
5J88|1|DA|C|1092
5J88|1|DA|G|1093
5J88|1|DA|U|1094
5J88|1|DA|A|1095
5J88|1|DA|A|1096
5J88|1|DA|U|1097
5J88|1|DA|A|1098
5J88|1|DA|G|1099
5J88|1|DA|C|1100

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DJ

50S ribosomal protein L11