HL_5J8A_037

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5J8A|1|BA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_037 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0211

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5J8A|1|BA|G|259
5J8A|1|BA|G|260
5J8A|1|BA|U|261
5J8A|1|BA|A|262
5J8A|1|BA|A|263
5J8A|1|BA|C|264
5J8A|1|BA|G|265
5J8A|1|BA|G|266
5J8A|1|BA|C|267

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BQ

30S ribosomal protein S17

Chain BT

30S ribosomal protein S20