HL_5J8A_053
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUCAGAGAUGAGA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8A_053 not in the Motif Atlas
- Homologous match to HL_5J7L_022
- Geometric discrepancy: 0.0412
- The information below is about HL_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5J8A|1|BA|U|1008
5J8A|1|BA|U|1009
5J8A|1|BA|U|1010
5J8A|1|BA|C|1011
5J8A|1|BA|A|1012
5J8A|1|BA|G|1013
5J8A|1|BA|A|1014
5J8A|1|BA|G|1015
5J8A|1|BA|A|1016
5J8A|1|BA|U|1017
5J8A|1|BA|G|1018
5J8A|1|BA|A|1019
5J8A|1|BA|G|1020
5J8A|1|BA|A|1021
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BN
- 30S ribosomal protein S14
- Chain BS
- 30S ribosomal protein S19
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