HL_5J8A_059

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_059 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.0229

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J8A|1|BA|C|1314
5J8A|1|BA|U|1315
5J8A|1|BA|G|1316
5J8A|1|BA|C|1317
5J8A|1|BA|A|1318
5J8A|1|BA|A|1319
5J8A|1|BA|C|1320
5J8A|1|BA|U|1321
5J8A|1|BA|C|1322
5J8A|1|BA|G|1323

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19