HL_5J8A_092

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

5J8A|1|CA|U|1174, 5J8A|1|CA|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_092 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3044

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5J8A|1|CA|G|1168
5J8A|1|CA|A|1169
5J8A|1|CA|C|1170
5J8A|1|CA|G|1171
5J8A|1|CA|C|1172
5J8A|1|CA|U|1173
5J8A|1|CA|U|1174
5J8A|1|CA|A|1175
5J8A|1|CA|U|1176
5J8A|1|CA|G|1177
5J8A|1|CA|C|1178
5J8A|1|CA|G|1179
5J8A|1|CA|U|1180
5J8A|1|CA|U|1181

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CS

50S ribosomal protein L21