HL_5J8A_110

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

5J8A|1|CA|A|1913, 5J8A|1|CA|C|1914, 5J8A|1|CA|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_110 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0657

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

5J8A|1|CA|G|1910
5J8A|1|CA|PSU|1911
5J8A|1|CA|A|1912
5J8A|1|CA|A|1913
5J8A|1|CA|C|1914
5J8A|1|CA|3TD|1915
5J8A|1|CA|A|1916
5J8A|1|CA|PSU|1917
5J8A|1|CA|A|1918
5J8A|1|CA|A|1919
5J8A|1|CA|C|1920

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA