HL_5J8A_116

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5J8A|1|CA|A|2268, 5J8A|1|CA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_116 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0432

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5J8A|1|CA|C|2264
5J8A|1|CA|U|2265
5J8A|1|CA|A|2266
5J8A|1|CA|A|2267
5J8A|1|CA|A|2268
5J8A|1|CA|G|2269
5J8A|1|CA|A|2270
5J8A|1|CA|G|2271
5J8A|1|CA|U|2272
5J8A|1|CA|A|2273
5J8A|1|CA|A|2274
5J8A|1|CA|C|2275
5J8A|1|CA|G|2276

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L16

Chain CX

50S ribosomal protein L27