HL_5J8A_149

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

5J8A|1|DA|U|546, 5J8A|1|DA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_149 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.0445

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5J8A|1|DA|G|543
5J8A|1|DA|C|544
5J8A|1|DA|U|545
5J8A|1|DA|U|546
5J8A|1|DA|A|547
5J8A|1|DA|G|548
5J8A|1|DA|G|549
5J8A|1|DA|C|550

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DK

50S ribosomal protein L13

Chain DS

50S ribosomal protein L21