HL_5J8A_152

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_152 not in the Motif Atlas

Homologous match to HL_5J7L_152

Geometric discrepancy: 0.0295

The information below is about HL_5J7L_152

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J8A|1|DA|G|629
5J8A|1|DA|G|630
5J8A|1|DA|A|631
5J8A|1|DA|A|632
5J8A|1|DA|A|633
5J8A|1|DA|C|634

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DM

50S ribosomal protein L15