HL_5J8A_164

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_164 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.0532

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J8A|1|DA|U|1222
5J8A|1|DA|G|1223
5J8A|1|DA|U|1224
5J8A|1|DA|G|1225
5J8A|1|DA|A|1226
5J8A|1|DA|G|1227

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15

Chain DR

50S ribosomal protein L20

Chain DS

50S ribosomal protein L21