HL_5J8A_165

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_165 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0364

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5J8A|1|DA|G|1281
5J8A|1|DA|U|1282
5J8A|1|DA|G|1283
5J8A|1|DA|A|1284
5J8A|1|DA|A|1285
5J8A|1|DA|A|1286
5J8A|1|DA|A|1287
5J8A|1|DA|G|1288
5J8A|1|DA|C|1289

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DO

50S ribosomal protein L17

Chain DT

50S ribosomal protein L22