HL_5J8B_026

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5J8B|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_026 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.4855

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

5J8B|1|A|C|930
5J8B|1|A|C|931
5J8B|1|A|C|932
5J8B|1|A|A|933
5J8B|1|A|C|934
5J8B|1|A|C|935
5J8B|1|A|A|936
5J8B|1|A|G|937

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13