5J8B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5J8B_001 | 1/A/57:66 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5J8B_002 | 1/A/85:93 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5J8B_003 | 1/A/120:125 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_5J8B_004 | 1/A/135:140 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_5J8B_005 | 1/A/182:189 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_5J8B_006 | 1/A/213:218 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_5J8B_007 | 1/A/234:240 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_5J8B_009 | 1/A/328:335 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_5J8B_010 | 1/A/342:346 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_5J8B_011 | 1/A/350:358 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_5J8B_012 | 1/A/408:418 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_5J8B_013 | 1/A/436:443 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5J8B_014 | 1/A/487:492 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5J8B_015 | 1/A/512:517 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_5J8B_017 | 1/A/588:597 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_5J8B_018 | 1/A/634:640 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_5J8B_019 | 1/A/653:658 | GNRA | homologous HL_7RQB_020 NA | |
| HL_5J8B_020 | 1/A/665:671 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5J8B_022 | 1/A/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5J8B_023 | 1/A/790:799 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5J8B_024 | 1/A/825:831 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_5J8B_025 | 1/A/872:877 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_5J8B_026 | 1/A/930:937 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_5J8B_027 | 1/A/999:1006 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5J8B_028 | 1/A/1023:1030 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5J8B_029 | 1/A/1109:1119 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_5J8B_030 | 1/A/1137:1144 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_5J8B_032 | 1/A/1267:1272 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5J8B_033 | 1/A/1326:1334 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_5J8B_034 | 1/A/1369:1375 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_5J8B_035 | 1/A/1408:1413 | GNRA | homologous HL_7RQB_035 NA | |
| HL_5J8B_036 | 1/A/1434:1443 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5J8B_037 | 1/A/1498:1505 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_5J8B_038 | 1/A/1537:1543 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_5J8B_040 | 1/A/1611:1614 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_5J8B_041 | 1/A/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5J8B_042 | 1/A/1676:1681 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_5J8B_043 | 1/A/1737:1742 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_5J8B_114 | 1/A/1759:1775 | tRNA D-loop | geometric HL_4V9K_033 HL_48417.5 | |
| HL_5J8B_045 | 1/A/1782:1786 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_5J8B_046 | 1/A/1807:1817 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_5J8B_047 | 1/A/1836:1841 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5J8B_048 | 1/A/1894:1899 | GNRA | homologous HL_7RQB_047 NA | |
| HL_5J8B_049 | 1/A/1931:1941 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5J8B_050 | 1/A/1970:1978 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_5J8B_051 | 1/A/2048:2057 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5J8B_053 | 1/A/2225:2230 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_5J8B_054 | 1/A/2259:2267 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_5J8B_055 | 1/A/2275:2287 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5J8B_120 | 1/A/2315:2323 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_5J8B_057 | 1/A/2335:2342 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5J8B_058 | 1/A/2366:2373 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5J8B_059 | 1/A/2385:2390 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5J8B_060 | 1/A/2415:2424 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5J8B_061 | 1/A/2482:2490 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_5J8B_062 | 1/A/2539:2546 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5J8B_063 | 1/A/2562:2568 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_5J8B_064 | 1/A/2605:2610 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5J8B_065 | 1/A/2669:2674 | GNRA | geometric HL_3LQX_001 HL_37824.7 | |
| HL_5J8B_066 | 1/A/2712:2717 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5J8B_067 | 1/A/2757:2771 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5J8B_069 | 1/A/2828:2836 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_5J8B_070 | 1/A/2865:2870 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5J8B_115 | 1/B/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_5J8B_071 | 1/B/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_5J8B_072 | 1/B/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_5J8B_073 | 1/a/13:23 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_5J8B_076 | 1/a/187:192 | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_5J8B_077 | 1/a/208:212 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_5J8B_078 | 1/a/255:263 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_5J8B_079 | 1/a/292:297 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_5J8B_080 | 1/a/316:329 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_5J8B_081 | 1/a/338:343 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_5J8B_082 | 1/a/375:380 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_5J8B_083 | 1/a/415:420 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_5J8B_084 | 1/a/453:459 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_5J8B_085 | 1/a/506:511 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_5J8B_086 | 1/a/601:607 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_5J8B_087 | 1/a/673:682 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_5J8B_088 | 1/a/710:715 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_5J8B_089 | 1/a/770:780 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_5J8B_090 | 1/a/822:826 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_5J8B_091 | 1/a/840:845 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_5J8B_092 | 1/a/875:880 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_5J8B_093 | 1/a/941:950 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_5J8B_094 | 1/a/991:996 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_5J8B_096 | 1/a/1059:1064 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_5J8B_097 | 1/a/1072:1079 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5J8B_098 | 1/a/1117:1123 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_5J8B_099 | 1/a/1148:1153 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_5J8B_100 | 1/a/1247:1252 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_5J8B_101 | 1/a/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_5J8B_102 | 1/a/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_5J8B_103 | 1/a/1430:1435 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_5J8B_104 | 1/a/1493:1498 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5J8B_118 | 1/w/31:39 | tRNA anticodon loop | ||
| HL_5J8B_108 | 1/x/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_5J8B_109 | 1/x/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.5 | |
| HL_5J8B_110 | 1/x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5L4O_003 NA | |
| HL_5J8B_119 | 1/y/31:39 | tRNA anticodon loop | homologous HL_6GSL_209 HL_06059.5 | |
| HL_5J8B_113 | 1/y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QF6_003 HL_28252.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5J8B_008 | Mini UNCG | ||
| HL_5J8B_016 | No text annotation | ||
| HL_5J8B_021 | No text annotation | ||
| HL_5J8B_031 | No text annotation | ||
| HL_5J8B_039 | No text annotation | ||
| HL_5J8B_044 | No text annotation | ||
| HL_5J8B_052 | UNCG | ||
| HL_5J8B_056 | No text annotation | ||
| HL_5J8B_068 | No text annotation | ||
| HL_5J8B_074 | No text annotation | ||
| HL_5J8B_075 | GNRA with near cWW | ||
| HL_5J8B_116 | GNRA | ||
| HL_5J8B_095 | No text annotation | ||
| HL_5J8B_117 | No text annotation | ||
| HL_5J8B_105 | No text annotation | ||
| HL_5J8B_106 | No text annotation | ||
| HL_5J8B_107 | T-loop with 2 stacked bulged bases | ||
| HL_5J8B_111 | No text annotation | ||
| HL_5J8B_112 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5J8B_001 | 1/A/23:29, 1/A/534:540 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_5J8B_002 | 1/A/35:36, 1/A/467:469 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5J8B_004 | 1/A/41:42, 1/A/460:462 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_5J8B_005 | 1/A/79:83, 1/A/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5J8B_006 | 1/A/171:172, 1/A/200:202 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_5J8B_007 | 1/A/176:182, 1/A/189:196 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_5J8B_008 | 1/A/227:233, 1/A/241:246 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_5J8B_009 | 1/A/268:269, 1/A/272:274 | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_5J8B_010 | 1/A/290:291, 1/A/391:393 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_5J8B_012 | 1/A/303:307, 1/A/380:383 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_5J8B_013 | 1/A/311:313, 1/A/373:376 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_5J8B_014 | 1/A/316:318, 1/A/366:370 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5J8B_015 | 1/A/506:509, 1/A/520:533 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_5J8B_016 | 1/A/586:588, 1/A/597:599 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_5J8B_017 | 1/A/628:632, 1/A/642:646 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_5J8B_018 | 1/A/718:720, 1/A/852:854 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_5J8B_019 | 1/A/720:724, 1/A/845:852 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_5J8B_020 | 1/A/743:744, 1/A/809:811 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_5J8B_021 | 1/A/748:749, 1/A/774:776 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_5J8B_022 | 1/A/749:753, 1/A/770:774 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_5J8B_023 | 1/A/784:787, 1/A/802:804 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_5J8B_024 | 1/A/821:823, 1/A/833:837 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_5J8B_025 | 1/A/883:884, 1/A/984:986 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_5J8B_026 | 1/A/890:892, 1/A/975:978 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_5J8B_027 | 1/A/892:896, 1/A/972:975 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_5J8B_028 | 1/A/904:908, 1/A/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_5J8B_029 | 1/A/908:909, 1/A/958:960 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_5J8B_030 | 1/A/910:914, 1/A/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5J8B_175 | 1/A/921:925, 1/A/943:947 | No text annotation | ||
| IL_5J8B_033 | 1/A/996:998, 1/A/1007:1009 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_5J8B_034 | 1/A/1039:1041, 1/A/1204:1205 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_5J8B_035 | 1/A/1043:1047, 1/A/1198:1202 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_5J8B_036 | 1/A/1049:1056, 1/A/1195:1196 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_5J8B_037 | 1/A/1056:1058, 1/A/1194:1195 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_5J8B_038 | 1/A/1063:1069, 1/A/1184:1189 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_5J8B_039 | 1/A/1069:1075, 1/A/1169:1184 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_5J8B_040 | 1/A/1076:1079, 1/A/1166:1168 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5J8B_041 | 1/A/1088:1097, 1/A/1152:1157 | No text annotation | ||
| IL_5J8B_042 | 1/A/1104:1107, 1/A/1121:1124 | No text annotation | geometric IL_1MMS_001 IL_92446.2 | |
| IL_5J8B_043 | 1/A/1132:1136, 1/A/1145:1147 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.2 | |
| IL_5J8B_044 | 1/A/1240:1242, 1/A/1292:1295 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_5J8B_045 | 1/A/1246:1250, 1/A/1285:1288 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_5J8B_046 | 1/A/1252:1259, 1/A/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5J8B_047 | 1/A/1263:1265, 1/A/1274:1275 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5J8B_048 | 1/A/1307:1314, 1/A/2032:2038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5J8B_049 | 1/A/1355:1358, 1/A/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_5J8B_050 | 1/A/1364:1368, 1/A/1376:1378 | C-loop | homologous IL_7RQB_051 NA | |
| IL_5J8B_051 | 1/A/1396:1400, 1/A/1421:1425 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5J8B_052 | 1/A/1402:1406, 1/A/1415:1419 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_5J8B_053 | 1/A/1460:1461, 1/A/1628:1632 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_5J8B_054 | 1/A/1462:1466, 1/A/1623:1627 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_5J8B_055 | 1/A/1478:1480, 1/A/1603:1606 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_5J8B_056 | 1/A/1482:1485, 1/A/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5J8B_057 | 1/A/1494:1496, 1/A/1508:1509 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_5J8B_058 | 1/A/1497:1498, 1/A/1505:1507 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_5J8B_059 | 1/A/1515:1519, 1/A/1565:1568 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_5J8B_060 | 1/A/1527:1528, 1/A/1551:1557 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5J8B_061 | 1/A/1534:1536, 1/A/1544:1545 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5J8B_062 | 1/A/1571:1575, 1/A/1586:1592 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_5J8B_063 | 1/A/1697:1702, 1/A/2025:2027 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_5J8B_064 | 1/A/1709:1711, 1/A/2016:2018 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_5J8B_065 | 1/A/1712:1715, 1/A/2014:2015 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_5J8B_177 | 1/A/1712:1720, 1/A/2011:2015 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_5J8B_066 | 1/A/1715:1720, 1/A/2011:2014 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_5J8B_067 | 1/A/1732:1737, 1/A/1742:1748 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5J8B_068 | 1/A/1800:1801, 1/A/2001:2003 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5J8B_069 | 1/A/1828:1834, 1/A/1843:1851 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5J8B_070 | 1/A/1867:1870, 1/A/1923:1924 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_5J8B_071 | 1/A/1871:1872, 1/A/1919:1922 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_5J8B_072 | 1/A/1876:1879, 1/A/1914:1915 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_5J8B_073 | 1/A/1881:1885, 1/A/1908:1912 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_5J8B_074 | 1/A/1886:1890, 1/A/1903:1907 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5J8B_075 | 1/A/1954:1955, 1/A/1985:1988 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_5J8B_076 | 1/A/1955:1966, 1/A/1982:1985 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_5J8B_077 | 1/A/2071:2073, 1/A/2628:2629 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_5J8B_078 | 1/A/2075:2078, 1/A/2622:2626 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_5J8B_079 | 1/A/2088:2090, 1/A/2453:2454 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5J8B_080 | 1/A/2091:2092, 1/A/2449:2452 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5J8B_081 | 1/A/2102:2104, 1/A/2247:2250 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5J8B_082 | 1/A/2106:2108, 1/A/2243:2245 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_5J8B_083 | 1/A/2129:2131, 1/A/2200:2202 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
| IL_5J8B_084 | 1/A/2131:2141, 1/A/2199:2200 | No text annotation | geometric IL_3U4M_002 IL_32056.1 | |
| IL_5J8B_183 | 1/A/2145:2148, 1/A/2182:2195 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_5J8B_179 | 1/A/2150:2157, 1/A/2176:2180 | Kink-turn | homologous IL_3U4M_004 IL_70923.9 | |
| IL_5J8B_087 | 1/A/2308:2310, 1/A/2328:2332 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_5J8B_088 | 1/A/2361:2364, 1/A/2375:2378 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5J8B_089 | 1/A/2412:2414, 1/A/2425:2426 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_5J8B_090 | 1/A/2464:2465, 1/A/2509:2511 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_5J8B_091 | 1/A/2465:2466, 1/A/2507:2509 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_5J8B_092 | 1/A/2468:2470, 1/A/2504:2505 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_5J8B_093 | 1/A/2470:2472, 1/A/2500:2504 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_5J8B_094 | 1/A/2477:2481, 1/A/2491:2495 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_5J8B_095 | 1/A/2518:2519, 1/A/2591:2593 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_5J8B_096 | 1/A/2521:2523, 1/A/2585:2589 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_5J8B_097 | 1/A/2523:2524, 1/A/2582:2585 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_5J8B_098 | 1/A/2533:2534, 1/A/2551:2554 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_5J8B_099 | 1/A/2602:2603, 1/A/2612:2614 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5J8B_100 | 1/A/2647:2651, 1/A/2786:2794 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5J8B_101 | 1/A/2663:2669, 1/A/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_5J8B_102 | 1/A/2691:2695, 1/A/2737:2739 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5J8B_103 | 1/A/2698:2702, 1/A/2730:2734 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5J8B_104 | 1/A/2706:2707, 1/A/2722:2726 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_5J8B_105 | 1/A/2749:2754, 1/A/2774:2779 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_5J8B_106 | 1/A/2847:2848, 1/A/2887:2889 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5J8B_107 | 1/A/2852:2855, 1/A/2879:2883 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_5J8B_108 | 1/A/2856:2861, 1/A/2874:2878 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5J8B_109 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_5J8B_110 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_5J8B_111 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_5J8B_112 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_5J8B_113 | 1/B/71:79, 1/B/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5J8B_114 | 1/a/31:33, 1/a/536:537 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_5J8B_115 | 1/a/45:46, 1/a/392:394 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_5J8B_116 | 1/a/48:53, 1/a/355:357 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_5J8B_117 | 1/a/55:57, 1/a/352:353 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_5J8B_118 | 1/a/64:67, 1/a/97:98 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_5J8B_119 | 1/a/68:70, 1/a/94:96 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_5J8B_120 | 1/a/123:126, 1/a/227:228 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_5J8B_121 | 1/a/127:131, 1/a/223:226 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5J8B_122 | 1/a/143:148, 1/a/163:169 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_5J8B_123 | 1/a/181:183, 1/a/196:198 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_5J8B_124 | 1/a/238:243, 1/a/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_5J8B_125 | 1/a/245:248, 1/a/270:271 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_5J8B_126 | 1/a/288:289, 1/a/300:304 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5J8B_127 | 1/a/363:365, 1/a/388:389 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_5J8B_128 | 1/a/367:371, 1/a/385:386 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_5J8B_129 | 1/a/371:372, 1/a/383:385 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_5J8B_130 | 1/a/405:412, 1/a/423:429 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_5J8B_131 | 1/a/441:445, 1/a/468:473 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_5J8B_132 | 1/a/445:450, 1/a/462:468 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_5J8B_133 | 1/a/488:495, 1/a/524:525 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_5J8B_134 | 1/a/499:505, 1/a/512:520 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5J8B_135 | 1/a/553:559, 1/a/858:859 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_5J8B_136 | 1/a/564:568, 1/a/741:745 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_5J8B_137 | 1/a/578:580, 1/a/628:629 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_5J8B_138 | 1/a/581:582, 1/a/624:627 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_5J8B_139 | 1/a/589:596, 1/a/612:617 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_5J8B_140 | 1/a/638:639, 1/a/735:738 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_5J8B_141 | 1/a/641:642, 1/a/731:733 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_5J8B_142 | 1/a/646:650, 1/a/724:727 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_5J8B_180 | 1/a/657:661, 1/a/697:701 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_5J8B_144 | 1/a/667:672, 1/a/683:691 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_5J8B_145 | 1/a/758:762, 1/a/788:789 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_5J8B_146 | 1/a/763:767, 1/a/783:787 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_5J8B_147 | 1/a/865:872, 1/a/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_5J8B_148 | 1/a/900:901, 1/a/1376:1378 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_5J8B_149 | 1/a/903:905, 1/a/1373:1374 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_5J8B_150 | 1/a/911:913, 1/a/1363:1367 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_5J8B_151 | 1/a/931:932, 1/a/1208:1210 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_5J8B_152 | 1/a/971:975, 1/a/1027:1028 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_5J8B_153 | 1/a/1031:1033, 1/a/1190:1191 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_5J8B_154 | 1/a/1035:1039, 1/a/1186:1188 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_5J8B_155 | 1/a/1040:1041, 1/a/1181:1185 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_5J8B_156 | 1/a/1043:1044, 1/a/1177:1179 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_5J8B_157 | 1/a/1044:1046, 1/a/1175:1177 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_5J8B_158 | 1/a/1107:1111, 1/a/1126:1132 | No text annotation | homologous IL_4LFB_048 IL_85222.1 | |
| IL_5J8B_159 | 1/a/1111:1115, 1/a/1125:1126 | Minor groove platform | geometric IL_4LFB_049 IL_15052.4 | |
| IL_5J8B_160 | 1/a/1229:1235, 1/a/1266:1272 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_5J8B_161 | 1/a/1237:1240, 1/a/1259:1264 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_5J8B_162 | 1/a/1241:1242, 1/a/1256:1258 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_5J8B_181 | 1/a/1241:1244, 1/a/1255:1258 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_5J8B_163 | 1/a/1242:1244, 1/a/1255:1256 | Minor groove platform | homologous IL_4LFB_054 IL_51454.2 | |
| IL_5J8B_164 | 1/a/1285:1290, 1/a/1311:1316 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_5J8B_165 | 1/a/1382:1384, 1/a/1479:1482 | No text annotation | geometric IL_4V88_463 NA | |
| IL_5J8B_166 | 1/a/1384:1387, 1/a/1475:1479 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5J8B_167 | 1/a/1388:1390, 1/a/1472:1474 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 IL_87907.2 | |
| IL_5J8B_168 | 1/a/1390:1392, 1/a/1469:1472 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_5J8B_169 | 1/a/1395:1397, 1/a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5J8B_170 | 1/a/1399:1402, 1/a/1459:1462 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5J8B_171 | 1/a/1414:1418, 1/a/1444:1447 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_5J8B_172 | 1/a/1418:1420, 1/a/1442:1444 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_5J8B_173 | 1/a/1423:1428, 1/a/1437:1439 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5J8B_003 | Not an internal loop | ||
| IL_5J8B_011 | No text annotation | ||
| IL_5J8B_174 | Isolated cWS basepair | ||
| IL_5J8B_031 | Triple sheared related | ||
| IL_5J8B_182 | Other IL | ||
| IL_5J8B_032 | No text annotation | ||
| IL_5J8B_176 | No text annotation | ||
| IL_5J8B_178 | No text annotation | ||
| IL_5J8B_085 | No text annotation | ||
| IL_5J8B_086 | No text annotation | ||
| IL_5J8B_143 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5J8B_001 | 1/A/29:30, 1/A/499:506, 1/A/533:534 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_5J8B_029 | 1/A/29:30, 1/A/499:509, 1/A/520:534 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_5J8B_030 | 1/A/31:34, 1/A/470:486, 1/A/493:498 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_5J8B_002 | 1/A/54:55, 1/A/68:74, 1/A/107:111 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_5J8B_003 | 1/A/257:261, 1/A/281:288, 1/A/395:396 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5J8B_031 | 1/A/320:324, 1/A/339:348, 1/A/360:364 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_5J8B_004 | 1/A/729:735, 1/A/819:821, 1/A/837:840 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_5J8B_005 | 1/A/744:746, 1/A/778:782, 1/A/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5J8B_006 | 1/A/1100:1104, 1/A/1124:1132, 1/A/1147:1149 | No text annotation | ||
| J3_5J8B_007 | 1/A/1343:1348, 1/A/1670:1672, 1/A/1685:1688 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_5J8B_008 | 1/A/1351:1354, 1/A/1650:1656, 1/A/1665:1667 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5J8B_009 | 1/A/1389:1395, 1/A/1426:1430, 1/A/1447:1448 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5J8B_032 | 1/A/1469:1474, 1/A/1610:1611, 1/A/1614:1620 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_5J8B_010 | 1/A/2112:2114, 1/A/2217:2221, 1/A/2234:2239 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_5J8B_033 | 1/A/2293:2295, 1/A/2395:2406, 1/A/2432:2438 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_5J8B_011 | 1/A/2306:2308, 1/A/2332:2334, 1/A/2343:2348 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5J8B_012 | 1/A/2528:2531, 1/A/2556:2558, 1/A/2572:2578 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_5J8B_013 | 1/A/2801:2803, 1/A/2815:2820, 1/A/2898:2902 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_5J8B_014 | 1/A/2823:2824, 1/A/2840:2845, 1/A/2891:2895 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_5J8B_015 | 1/B/11:16, 1/B/68:69, 1/B/108:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_5J8B_016 | 1/a/47:48, 1/a/357:363, 1/a/389:391 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_5J8B_034 | 1/a/47:53, 1/a/355:363, 1/a/389:391 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_5J8B_017 | 1/a/570:572, 1/a/635:638, 1/a/738:739 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_5J8B_035 | 1/a/570:572, 1/a/635:639, 1/a/735:739 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_5J8B_018 | 1/a/656:657, 1/a/701:709, 1/a/716:718 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_5J8B_019 | 1/a/810:813, 1/a/835:839, 1/a/846:852 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_5J8B_020 | 1/a/914:917, 1/a/1326:1332, 1/a/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_5J8B_021 | 1/a/921:924, 1/a/1217:1219, 1/a/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_5J8B_022 | 1/a/933:940, 1/a/951:962, 1/a/1203:1207 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_5J8B_023 | 1/a/968:971, 1/a/1028:1030, 1/a/1192:1197 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_5J8B_036 | 1/a/968:975, 1/a/1027:1030, 1/a/1192:1197 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_5J8B_025 | 1/a/1046:1051, 1/a/1090:1096, 1/a/1169:1175 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_5J8B_037 | 1/a/1056:1057, 1/a/1066:1069, 1/a/1082:1085 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_5J8B_027 | 1/a/1099:1101, 1/a/1138:1144, 1/a/1157:1166 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_5J8B_028 | 1/a/1219:1223, 1/a/1278:1285, 1/a/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_5J8B_001 | 1/A/256:257, 1/A/396:401, 1/A/425:432, 1/A/447:450 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_5J8B_002 | 1/A/320:324, 1/A/339:342, 1/A/346:348, 1/A/360:364 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_5J8B_003 | 1/A/1315:1321, 1/A/1339:1340, 1/A/1691:1694, 1/A/2030:2031 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_5J8B_004 | 1/A/1355:1359, 1/A/1383:1388, 1/A/1449:1450, 1/A/1642:1649 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_5J8B_005 | 1/A/1358:1359, 1/A/1383:1388, 1/A/1449:1450, 1/A/1642:1648 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_5J8B_006 | 1/A/1489:1491, 1/A/1512:1513, 1/A/1570:1571, 1/A/1592:1593 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_5J8B_007 | 1/A/1802:1806, 1/A/1818:1822, 1/A/1857:1860, 1/A/1996:2000 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_5J8B_008 | 1/A/1863:1865, 1/A/1926:1927, 1/A/1945:1954, 1/A/1988:1993 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5J8B_009 | 1/A/2296:2300, 1/A/2354:2358, 1/A/2381:2383, 1/A/2392:2394 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_5J8B_010 | 1/A/2654:2657, 1/A/2685:2687, 1/A/2743:2747, 1/A/2781:2783 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_5J8B_011 | 1/a/109:116, 1/a/235:236, 1/a/282:285, 1/a/307:308 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_5J8B_012 | 1/a/137:139, 1/a/173:178, 1/a/201:205, 1/a/215:217 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5J8B_013 | 1/a/559:561, 1/a/748:753, 1/a/794:805, 1/a/857:858 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_5J8B_014 | 1/w/7:10, 1/w/25:27, 1/w/43:49, 1/w/65:66 | tRNA junction | homologous J4_4RDX_003 J4_70449.27 | |
| J4_5J8B_015 | 1/x/7:10, 1/x/25:27, 1/x/43:49, 1/x/65:66 | No text annotation | homologous J4_9DFC_015 J4_70449.27 | |
| J4_5J8B_016 | 1/y/7:10, 1/y/25:27, 1/y/43:49, 1/y/65:66 | tRNA junction | homologous J4_3KFU_002 J4_70449.27 | |
| J5_5J8B_001 | 1/A/45:52, 1/A/113:118, 1/A/127:128, 1/A/147:149, 1/A/164:166 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_5J8B_002 | 1/A/256:261, 1/A/281:288, 1/A/395:401, 1/A/425:432, 1/A/447:450 | No text annotation | ||
| J5_5J8B_003 | 1/A/555:557, 1/A/582:586, 1/A/599:601, 1/A/1306:1307, 1/A/2038:2039 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_5J8B_004 | 1/A/606:611, 1/A/714:717, 1/A/855:858, 1/A/1239:1240, 1/A/1295:1301 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_5J8B_005 | 1/A/623:626, 1/A/648:652, 1/A/659:662, 1/A/674:679, 1/A/698:702 | No text annotation | ||
| J5_5J8B_006 | 1/A/1720:1728, 1/A/1752:1753, 1/A/1781:1782, 1/A/1786:1794, 1/A/2009:2011 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_5J8B_007 | 1/A/2078:2085, 1/A/2457:2464, 1/A/2511:2518, 1/A/2593:2599, 1/A/2617:2622 | No text annotation | ||
| J5_5J8B_008 | 1/A/2095:2098, 1/A/2254:2257, 1/A/2269:2270, 1/A/2292:2293, 1/A/2438:2446 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_5J8B_009 | 1/a/37:40, 1/a/399:402, 1/a/432:437, 1/a/477:484, 1/a/529:532 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5J8B_010 | 1/a/59:62, 1/a/100:107, 1/a/310:312, 1/a/333:335, 1/a/346:350 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J6_5J8B_001 | 1/A/43:44, 1/A/167:171, 1/A/202:212, 1/A/219:223, 1/A/250:254, 1/A/452:459 | No text annotation | ||
| J6_5J8B_002 | 1/A/2095:2098, 1/A/2254:2257, 1/A/2269:2270, 1/A/2292:2295, 1/A/2395:2406, 1/A/2432:2446 | No text annotation | ||
| J7_5J8B_001 | 1/A/7:14, 1/A/549:555, 1/A/2039:2044, 1/A/2061:2064, 1/A/2636:2641, 1/A/2800:2801, 1/A/2902:2903 | No text annotation | ||
| J7_5J8B_002 | 1/A/863:868, 1/A/881:882, 1/A/987:990, 1/A/1015:1021, 1/A/1032:1036, 1/A/1208:1209, 1/A/1229:1234 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5J8B_024 | No text annotation | ||
| J3_5J8B_026 | No text annotation |
Coloring options: