3D structure

PDB id
5J8B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUCCGG
Length
6 nucleotides
Bulged bases
5J8B|1|A|C|2166, 5J8B|1|A|C|2167
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5J8B_052 not in the Motif Atlas
Homologous match to HL_3U4M_001
Geometric discrepancy: 0.5083
The information below is about HL_3U4M_001
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

5J8B|1|A|C|2164
5J8B|1|A|U|2165
5J8B|1|A|C|2166
5J8B|1|A|C|2167
5J8B|1|A|G|2168
5J8B|1|A|G|2169

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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