HL_5J8B_052

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

5J8B|1|A|C|2166, 5J8B|1|A|C|2167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_052 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.5083

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

5J8B|1|A|C|2164
5J8B|1|A|U|2165
5J8B|1|A|C|2166
5J8B|1|A|C|2167
5J8B|1|A|G|2168
5J8B|1|A|G|2169

Current chains

Chain A

23S Ribosomal RNA

Nearby chains