HL_5J8B_099

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_099 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.1051

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5J8B|1|a|C|1148
5J8B|1|a|G|1149
5J8B|1|a|A|1150
5J8B|1|a|A|1151
5J8B|1|a|A|1152
5J8B|1|a|G|1153

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2