HL_5J8B_105

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

5J8B|1|w|G|18, 5J8B|1|w|G|19, 5J8B|1|w|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_105 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.1881

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8B|1|w|C|13
5J8B|1|w|A|14
5J8B|1|w|G|15
5J8B|1|w|G|18
5J8B|1|w|G|19
5J8B|1|w|U|20
5J8B|1|w|A|21
5J8B|1|w|G|22

Current chains

Chain w

A-site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA