HL_5J8B_114

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGGGGUGAUGAGCCCCG

Length

17 nucleotides

Bulged bases

5J8B|1|A|U|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8B_114 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3351

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

5J8B|1|A|U|1759
5J8B|1|A|G|1760
5J8B|1|A|G|1761
5J8B|1|A|G|1762
5J8B|1|A|G|1763
5J8B|1|A|U|1764
5J8B|1|A|G|1765
5J8B|1|A|A|1766
5J8B|1|A|U|1767
5J8B|1|A|G|1768
5J8B|1|A|A|1769
5J8B|1|A|G|1770
5J8B|1|A|C|1771
5J8B|1|A|C|1772
5J8B|1|A|C|1773
5J8B|1|A|C|1774
5J8B|1|A|G|1775

Current chains

Chain A

23S Ribosomal RNA

Nearby chains