HL_5J91_077

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5J91|1|CA|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J91_077 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0938

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J91|1|CA|C|487
5J91|1|CA|G|488
5J91|1|CA|G|489
5J91|1|CA|C|490
5J91|1|CA|G|491
5J91|1|CA|A|492
5J91|1|CA|G|493

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein L22