HL_5J91_086

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

5J91|1|CA|U|827, 5J91|1|CA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J91_086 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.0607

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5J91|1|CA|U|826
5J91|1|CA|U|827
5J91|1|CA|U|828
5J91|1|CA|A|829
5J91|1|CA|G|830
5J91|1|CA|G|831

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein L15