HL_5J91_110

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

5J91|1|CA|A|1913, 5J91|1|CA|C|1914, 5J91|1|CA|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J91_110 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0915

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

5J91|1|CA|G|1910
5J91|1|CA|PSU|1911
5J91|1|CA|A|1912
5J91|1|CA|A|1913
5J91|1|CA|C|1914
5J91|1|CA|3TD|1915
5J91|1|CA|A|1916
5J91|1|CA|PSU|1917
5J91|1|CA|A|1918
5J91|1|CA|A|1919
5J91|1|CA|C|1920

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA