HL_5J91_189

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J91_189 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.032

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J91|1|DA|G|2303
5J91|1|DA|G|2304
5J91|1|DA|U|2305
5J91|1|DA|C|2306
5J91|1|DA|G|2307
5J91|1|DA|G|2308
5J91|1|DA|A|2309
5J91|1|DA|C|2310
5J91|1|DA|A|2311
5J91|1|DA|U|2312
5J91|1|DA|C|2313

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DF

50S ribosomal protein L5