HL_5J91_193

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

5J91|1|DA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J91_193 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0278

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5J91|1|DA|U|2404
5J91|1|DA|G|2405
5J91|1|DA|A|2406
5J91|1|DA|A|2407
5J91|1|DA|U|2408
5J91|1|DA|G|2409
5J91|1|DA|G|2410
5J91|1|DA|A|2411
5J91|1|DA|A|2412
5J91|1|DA|G|2413

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15