HL_5JBG_001

3D structure

PDB id

5JBG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chicken LGP2 with 5'ppp 26-mer hairpin RNA with 3' GG overhang and ADP-AlF4-Mg2+ at 2.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

CGG

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JBG_001 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1509

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JBG|1|X|C|10
5JBG|1|X|G|11
5JBG|1|X|G|15

Current chains

Chain X

RNA (5'-R(*GPPP*GP*AP*GP*CP*GP*UP*GP*CP*CP*GP*GP*GP*CP*AP*CP*GP*CP*UP*CP*CP*GP*G)-3')

Nearby chains

Chain A

LGP2