HL_5JBH_012

3D structure

PDB id

5JBH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

AGUGUAAAAAGCU

Length

13 nucleotides

Bulged bases

5JBH|1|2|A|434

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JBH|1|2|A|429
5JBH|1|2|G|430
5JBH|1|2|U|431
5JBH|1|2|G|432
5JBH|1|2|U|433
5JBH|1|2|A|434
5JBH|1|2|A|435
5JBH|1|2|A|436
5JBH|1|2|A|437
5JBH|1|2|A|438
5JBH|1|2|G|439
5JBH|1|2|C|440
5JBH|1|2|U|441

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein uS4

Chain E

30S ribosomal protein eS4

Chain V

30S ribosomal protein eS24