RNA 3D Hub //

5JBH Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5JBH_0011/2/7:17No text annotation
HL_5JBH_0021/2/72:77No text annotation
HL_5JBH_0031/2/143:148No text annotation
HL_5JBH_0041/2/179:184No text annotation
HL_5JBH_0051/2/206:211No text annotation
HL_5JBH_0061/2/255:263No text annotation
HL_5JBH_0071/2/292:297No text annotation
HL_5JBH_0081/2/316:329No text annotation
HL_5JBH_0091/2/338:343No text annotation
HL_5JBH_0101/2/375:380No text annotation
HL_5JBH_0111/2/409:413No text annotation
HL_5JBH_0121/2/429:441No text annotation
HL_5JBH_0131/2/475:480No text annotation
HL_5JBH_0141/2/570:576No text annotation
HL_5JBH_0151/2/643:652No text annotation
HL_5JBH_0161/2/680:685No text annotation
HL_5JBH_0171/2/740:750No text annotation
HL_5JBH_0181/2/796:802No text annotation
HL_5JBH_0191/2/820:825No text annotation
HL_5JBH_0201/2/855:860No text annotation
HL_5JBH_0211/2/922:931No text annotation
HL_5JBH_0221/2/972:978No text annotation
HL_5JBH_0231/2/1028:1033No text annotation
HL_5JBH_0241/2/1041:1048No text annotation
HL_5JBH_0251/2/1091:1096No text annotation
HL_5JBH_0261/2/1125:1131No text annotation
HL_5JBH_0271/2/1225:1230No text annotation
HL_5JBH_0281/2/1274:1283No text annotation
HL_5JBH_0371/2/1317:1325No text annotation
HL_5JBH_0301/2/1405:1410No text annotation
HL_5JBH_0311/2/1470:1475No text annotation
HL_5JBH_0321/4/13:23tRNA D-loop
homologous
HL_5B63_003
HL_20811.4
HL_5JBH_0331/4/32:40tRNA anticodon loop
homologous
HL_6CFJ_107
HL_06059.7
HL_5JBH_0341/4/54:62T-loop with 2 stacked bulged bases
homologous
HL_5AH5_008
HL_28252.9

Problematic loops

#loop idProblemSequence
HL_5JBH_035No text annotation
HL_5JBH_036No text annotation
HL_5JBH_029No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5JBH_0011/2/38:40,
1/2/392:395		No text annotation
IL_5JBH_0021/2/42:48,
1/2/355:357		No text annotation
IL_5JBH_0031/2/50:52,
1/2/352:353		No text annotation
IL_5JBH_0581/2/58:62,
1/2/87:89		No text annotation
IL_5JBH_0041/2/59:62,
1/2/87:88		No text annotation
IL_5JBH_0051/2/62:65,
1/2/84:87		No text annotation
IL_5JBH_0061/2/111:113,
1/2/228:230		No text annotation
IL_5JBH_0071/2/113:117,
1/2/226:228		No text annotation
IL_5JBH_0081/2/117:121,
1/2/223:226		No text annotation
IL_5JBH_0091/2/133:138,
1/2/153:159		No text annotation
IL_5JBH_0101/2/175:177,
1/2/186:187		No text annotation
IL_5JBH_0111/2/201:204,
1/2/213:214		No text annotation
IL_5JBH_0121/2/238:243,
1/2/273:280		No text annotation
IL_5JBH_0131/2/245:248,
1/2/270:271		No text annotation
IL_5JBH_0141/2/288:289,
1/2/300:304		No text annotation
IL_5JBH_0151/2/363:365,
1/2/388:389		No text annotation
IL_5JBH_0161/2/367:371,
1/2/385:386		No text annotation
IL_5JBH_0171/2/371:372,
1/2/383:385		No text annotation
IL_5JBH_0181/2/456:464,
1/2/493:494		No text annotation
IL_5JBH_0191/2/468:474,
1/2/481:489		No text annotation
IL_5JBH_0201/2/532:537,
1/2/711:716		No text annotation
IL_5JBH_0211/2/547:549,
1/2/598:599		No text annotation
IL_5JBH_0221/2/550:551,
1/2/594:597		No text annotation
IL_5JBH_0651/2/557:563,
1/2/583:588		No text annotation
IL_5JBH_0241/2/608:609,
1/2/705:708		No text annotation
IL_5JBH_0251/2/611:612,
1/2/701:703		No text annotation
IL_5JBH_0261/2/614:620,
1/2/694:699		No text annotation
IL_5JBH_0661/2/629:631,
1/2/667:669		No text annotation
IL_5JBH_0281/2/638:642,
1/2/653:660		No text annotation
IL_5JBH_0291/2/728:732,
1/2/758:759		No text annotation
IL_5JBH_0301/2/733:737,
1/2/753:757		No text annotation
IL_5JBH_0311/2/845:852,
1/2/863:868		No text annotation
IL_5JBH_0321/2/880:881,
1/2/1353:1355		No text annotation
IL_5JBH_0331/2/883:886,
1/2/1349:1351		No text annotation
IL_5JBH_0341/2/891:894,
1/2/1340:1344		No text annotation
IL_5JBH_0351/2/912:913,
1/2/1186:1188		No text annotation
IL_5JBH_0361/2/956:958,
1/2/989:992		No text annotation
IL_5JBH_0371/2/958:965,
1/2/985:989		No text annotation
IL_5JBH_0381/2/967:969,
1/2/981:983		No text annotation
IL_5JBH_0391/2/1000:1002,
1/2/1168:1169		No text annotation
IL_5JBH_0401/2/1004:1008,
1/2/1164:1166		No text annotation
IL_5JBH_0671/2/1009:1010,
1/2/1159:1163		No text annotation
IL_5JBH_0421/2/1012:1013,
1/2/1155:1157		No text annotation
IL_5JBH_0431/2/1074:1080,
1/2/1103:1111		No text annotation
IL_5JBH_0681/2/1075:1086,
1/2/1101:1110		No text annotation
IL_5JBH_0441/2/1080:1086,
1/2/1101:1103		No text annotation
IL_5JBH_0451/2/1207:1213,
1/2/1244:1250		No text annotation
IL_5JBH_0461/2/1215:1218,
1/2/1237:1242		No text annotation
IL_5JBH_0471/2/1219:1222,
1/2/1233:1236		No text annotation
IL_5JBH_0481/2/1263:1268,
1/2/1289:1294		No text annotation
IL_5JBH_0491/2/1359:1361,
1/2/1456:1459		No text annotation
IL_5JBH_0501/2/1361:1364,
1/2/1452:1456		No text annotation
IL_5JBH_0511/2/1365:1367,
1/2/1449:1451		No text annotation
IL_5JBH_0631/2/1365:1369,
1/2/1446:1451		No text annotation
IL_5JBH_0521/2/1367:1369,
1/2/1446:1449		No text annotation
IL_5JBH_0531/2/1372:1374,
1/2/1441:1443		No text annotation
IL_5JBH_0541/2/1376:1379,
1/2/1436:1439		No text annotation
IL_5JBH_0551/2/1391:1394,
1/2/1421:1424		No text annotation
IL_5JBH_0691/2/1462:1464,
1/2/1481:1483		No text annotation

Problematic loops

#loop idProblemSequence
IL_5JBH_057No text annotation
IL_5JBH_059No text annotation
IL_5JBH_060No text annotation
IL_5JBH_023No text annotation
IL_5JBH_027No text annotation
IL_5JBH_061No text annotation
IL_5JBH_041No text annotation
IL_5JBH_062No text annotation
IL_5JBH_064No text annotation
IL_5JBH_056No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5JBH_0011/2/41:42,
1/2/357:363,
1/2/389:391		No text annotation
J3_5JBH_0021/2/539:541,
1/2/605:608,
1/2/708:709		No text annotation
J3_5JBH_0121/2/539:541,
1/2/605:609,
1/2/705:709		No text annotation
J3_5JBH_0031/2/625:627,
1/2/671:679,
1/2/686:689		No text annotation
J3_5JBH_0041/2/780:783,
1/2/815:819,
1/2/826:832		No text annotation
J3_5JBH_0151/2/895:897,
1/2/1305:1311,
1/2/1331:1339		No text annotation
J3_5JBH_0051/2/902:905,
1/2/1195:1197,
1/2/1297:1300		No text annotation
J3_5JBH_0061/2/914:921,
1/2/932:943,
1/2/1181:1185		No text annotation
J3_5JBH_0071/2/949:953,
1/2/995:999,
1/2/1170:1175		No text annotation
J3_5JBH_0161/2/1015:1020,
1/2/1059:1064,
1/2/1148:1153		No text annotation
J3_5JBH_0091/2/1025:1027,
1/2/1034:1038,
1/2/1051:1054		No text annotation
J3_5JBH_0101/2/1068:1070,
1/2/1115:1121,
1/2/1135:1144		No text annotation
J3_5JBH_0111/2/1197:1201,
1/2/1256:1263,
1/2/1294:1297		No text annotation
J4_5JBH_0011/2/99:107,
1/2/234:236,
1/2/282:285,
1/2/307:308		No text annotation
J4_5JBH_0021/2/127:129,
1/2/163:167,
1/2/195:200,
1/2/215:217		No text annotation
J4_5JBH_0051/2/522:531,
1/2/717:722,
1/2/765:775,
1/2/837:839		No text annotation
J4_5JBH_0061/4/7:10,
1/4/26:28,
1/4/44:50,
1/4/66:67		tRNA junction
homologous
J4_8VU0_001
J4_70449.29
J5_5JBH_0011/2/30:35,
1/2/398:402,
1/2/420:425,
1/2/445:452,
1/2/498:501		No text annotation
J5_5JBH_0021/2/54:57,
1/2/90:97,
1/2/310:312,
1/2/333:335,
1/2/346:350		No text annotation

Problematic loops

#loop idProblemSequence
J3_5JBH_013No text annotation
J3_5JBH_008No text annotation
J3_5JBH_014No text annotation
J4_5JBH_003No text annotation
J4_5JBH_004tRNA junction

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