HL_5JC9_021

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

5JC9|1|AA|A|968, 5JC9|1|AA|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.0567

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5JC9|1|AA|G|963
5JC9|1|AA|A|964
5JC9|1|AA|U|965
5JC9|1|AA|2MG|966
5JC9|1|AA|5MC|967
5JC9|1|AA|A|968
5JC9|1|AA|A|969
5JC9|1|AA|C|970
5JC9|1|AA|G|971
5JC9|1|AA|C|972

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AM

30S ribosomal protein S13