HL_5JC9_037

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5JC9|1|BA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_037 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0321

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5JC9|1|BA|G|259
5JC9|1|BA|G|260
5JC9|1|BA|U|261
5JC9|1|BA|A|262
5JC9|1|BA|A|263
5JC9|1|BA|C|264
5JC9|1|BA|G|265
5JC9|1|BA|G|266
5JC9|1|BA|C|267

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BQ

30S ribosomal protein S17

Chain BT

30S ribosomal protein S20