HL_5JC9_045

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_045 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.0949

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5JC9|1|BA|G|617
5JC9|1|BA|C|618
5JC9|1|BA|U|619
5JC9|1|BA|C|620
5JC9|1|BA|A|621
5JC9|1|BA|A|622
5JC9|1|BA|C|623

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BP

30S ribosomal protein S16