HL_5JC9_059

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_059 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.0483

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5JC9|1|BA|C|1314
5JC9|1|BA|U|1315
5JC9|1|BA|G|1316
5JC9|1|BA|C|1317
5JC9|1|BA|A|1318
5JC9|1|BA|A|1319
5JC9|1|BA|C|1320
5JC9|1|BA|U|1321
5JC9|1|BA|C|1322
5JC9|1|BA|G|1323

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19