HL_5JC9_085

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5JC9|1|CA|A|781, 5JC9|1|CA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_085 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3329

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5JC9|1|CA|U|779
5JC9|1|CA|G|780
5JC9|1|CA|A|781
5JC9|1|CA|A|782
5JC9|1|CA|A|783
5JC9|1|CA|G|784
5JC9|1|CA|G|785

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2