HL_5JC9_094

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_094 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1023

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5JC9|1|CA|G|1281
5JC9|1|CA|U|1282
5JC9|1|CA|G|1283
5JC9|1|CA|A|1284
5JC9|1|CA|A|1285
5JC9|1|CA|A|1286
5JC9|1|CA|A|1287
5JC9|1|CA|G|1288
5JC9|1|CA|C|1289

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CO

50S ribosomal protein L17

Chain CT

50S ribosomal protein L22