HL_5JC9_107

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

5JC9|1|CA|A|1780, 5JC9|1|CA|U|1781, 5JC9|1|CA|U|1782, 5JC9|1|CA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_107 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.1169

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5JC9|1|CA|U|1777
5JC9|1|CA|U|1778
5JC9|1|CA|U|1779
5JC9|1|CA|A|1780
5JC9|1|CA|U|1781
5JC9|1|CA|U|1782
5JC9|1|CA|A|1783
5JC9|1|CA|A|1784
5JC9|1|CA|A|1785
5JC9|1|CA|A|1786
5JC9|1|CA|A|1787

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2