HL_5JC9_111

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5JC9|1|CA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_111 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.063

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5JC9|1|CA|G|1949
5JC9|1|CA|G|1950
5JC9|1|CA|U|1951
5JC9|1|CA|A|1952
5JC9|1|CA|A|1953
5JC9|1|CA|G|1954
5JC9|1|CA|U|1955
5JC9|1|CA|U|1956
5JC9|1|CA|C|1957

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CL

50S ribosomal protein L14