HL_5JC9_116

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5JC9|1|CA|A|2268, 5JC9|1|CA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_116 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0395

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5JC9|1|CA|C|2264
5JC9|1|CA|U|2265
5JC9|1|CA|A|2266
5JC9|1|CA|A|2267
5JC9|1|CA|A|2268
5JC9|1|CA|G|2269
5JC9|1|CA|A|2270
5JC9|1|CA|G|2271
5JC9|1|CA|U|2272
5JC9|1|CA|A|2273
5JC9|1|CA|A|2274
5JC9|1|CA|C|2275
5JC9|1|CA|G|2276

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L16

Chain CX

50S ribosomal protein L27