3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
UGACGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5JC9_119 not in the Motif Atlas
Homologous match to HL_5J7L_190
Geometric discrepancy: 0.077
The information below is about HL_5J7L_190
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

5JC9|1|CA|U|2356
5JC9|1|CA|G|2357
5JC9|1|CA|A|2358
5JC9|1|CA|C|2359
5JC9|1|CA|G|2360
5JC9|1|CA|G|2361

Current chains

Chain CA
23S rRNA

Nearby chains

Chain C4
50S ribosomal protein L35
Chain CM
50S ribosomal protein L15
Chain CX
50S ribosomal protein L27

Coloring options:


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