HL_5JC9_128

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5JC9|1|CA|G|2751, 5JC9|1|CA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_128 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0231

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5JC9|1|CA|C|2745
5JC9|1|CA|U|2746
5JC9|1|CA|G|2747
5JC9|1|CA|A|2748
5JC9|1|CA|A|2749
5JC9|1|CA|A|2750
5JC9|1|CA|G|2751
5JC9|1|CA|C|2752
5JC9|1|CA|A|2753
5JC9|1|CA|U|2754
5JC9|1|CA|C|2755
5JC9|1|CA|U|2756
5JC9|1|CA|A|2757
5JC9|1|CA|A|2758
5JC9|1|CA|G|2759

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6