HL_5JC9_181

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

5JC9|1|DA|A|1913, 5JC9|1|DA|C|1914

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_181 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0326

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

5JC9|1|DA|G|1910
5JC9|1|DA|PSU|1911
5JC9|1|DA|A|1912
5JC9|1|DA|A|1913
5JC9|1|DA|C|1914
5JC9|1|DA|3TD|1915
5JC9|1|DA|A|1916
5JC9|1|DA|PSU|1917
5JC9|1|DA|A|1918
5JC9|1|DA|A|1919
5JC9|1|DA|C|1920

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA