HL_5JC9_189

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_189 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0295

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5JC9|1|DA|U|2324
5JC9|1|DA|G|2325
5JC9|1|DA|C|2326
5JC9|1|DA|A|2327
5JC9|1|DA|A|2328
5JC9|1|DA|U|2329
5JC9|1|DA|G|2330
5JC9|1|DA|G|2331

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DF

50S ribosomal protein L5

Chain DN

50S ribosomal protein L16

Chain DX

50S ribosomal protein L27