HL_5JC9_192

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

5JC9|1|DA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_192 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0323

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5JC9|1|DA|U|2404
5JC9|1|DA|G|2405
5JC9|1|DA|A|2406
5JC9|1|DA|A|2407
5JC9|1|DA|U|2408
5JC9|1|DA|G|2409
5JC9|1|DA|G|2410
5JC9|1|DA|A|2411
5JC9|1|DA|A|2412
5JC9|1|DA|G|2413

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15