HL_5JC9_211

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

5JC9|1|CA|U|958, 5JC9|1|CA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_211 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.0756

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5JC9|1|CA|PSU|955
5JC9|1|CA|G|956
5JC9|1|CA|C|957
5JC9|1|CA|U|958
5JC9|1|CA|A|959
5JC9|1|CA|A|960
5JC9|1|CA|C|961
5JC9|1|CA|G|962

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CN

50S ribosomal protein L16