HL_5JC9_213

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

5JC9|1|CA|U|1174, 5JC9|1|CA|A|1175, 5JC9|1|CA|G|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_213 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3011

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5JC9|1|CA|G|1168
5JC9|1|CA|A|1169
5JC9|1|CA|C|1170
5JC9|1|CA|G|1171
5JC9|1|CA|C|1172
5JC9|1|CA|U|1173
5JC9|1|CA|U|1174
5JC9|1|CA|A|1175
5JC9|1|CA|U|1176
5JC9|1|CA|G|1177
5JC9|1|CA|C|1178
5JC9|1|CA|G|1179
5JC9|1|CA|U|1180
5JC9|1|CA|U|1181

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CS

50S ribosomal protein L21