HL_5JCS_014
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 5JCS|1|x|U|879, 5JCS|1|x|G|880, 5JCS|1|x|A|883
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JCS_014 not in the Motif Atlas
- Geometric match to HL_6DTD_001
- Geometric discrepancy: 0.3583
- The information below is about HL_6DTD_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
5JCS|1|x|A|876
5JCS|1|x|C|877
5JCS|1|x|G|878
5JCS|1|x|U|879
5JCS|1|x|G|880
5JCS|1|x|C|881
5JCS|1|x|A|882
5JCS|1|x|A|883
5JCS|1|x|A|884
5JCS|1|x|U|885
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain j
- 60S ribosomal protein L37-A
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