5JCS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5JCS_001 | No text annotation | ||
| HL_5JCS_002 | No text annotation | ||
| HL_5JCS_003 | No text annotation | ||
| HL_5JCS_062 | No text annotation | ||
| HL_5JCS_004 | No text annotation | ||
| HL_5JCS_005 | No text annotation | ||
| HL_5JCS_006 | No text annotation | ||
| HL_5JCS_063 | No text annotation | ||
| HL_5JCS_007 | Anticodon loop related | ||
| HL_5JCS_064 | No text annotation | ||
| HL_5JCS_008 | No text annotation | ||
| HL_5JCS_009 | GNRA | ||
| HL_5JCS_010 | No text annotation | ||
| HL_5JCS_065 | No text annotation | ||
| HL_5JCS_011 | GNRA | ||
| HL_5JCS_012 | No text annotation | ||
| HL_5JCS_013 | GNRA | ||
| HL_5JCS_014 | No text annotation | ||
| HL_5JCS_015 | No text annotation | ||
| HL_5JCS_066 | No text annotation | ||
| HL_5JCS_016 | No text annotation | ||
| HL_5JCS_017 | No text annotation | ||
| HL_5JCS_018 | No text annotation | ||
| HL_5JCS_067 | No text annotation | ||
| HL_5JCS_068 | No text annotation | ||
| HL_5JCS_081 | No text annotation | ||
| HL_5JCS_019 | No text annotation | ||
| HL_5JCS_020 | No text annotation | ||
| HL_5JCS_021 | No text annotation | ||
| HL_5JCS_069 | No text annotation | ||
| HL_5JCS_022 | No text annotation | ||
| HL_5JCS_070 | No text annotation | ||
| HL_5JCS_023 | No text annotation | ||
| HL_5JCS_024 | GNRA | ||
| HL_5JCS_025 | No text annotation | ||
| HL_5JCS_026 | No text annotation | ||
| HL_5JCS_027 | GNRA variation | ||
| HL_5JCS_028 | No text annotation | ||
| HL_5JCS_029 | No text annotation | ||
| HL_5JCS_030 | tRNA D-loop | ||
| HL_5JCS_031 | No text annotation | ||
| HL_5JCS_032 | GNRA wlth extra near cWW | ||
| HL_5JCS_033 | UNCG | ||
| HL_5JCS_034 | No text annotation | ||
| HL_5JCS_071 | No text annotation | ||
| HL_5JCS_035 | No text annotation | ||
| HL_5JCS_036 | No text annotation | ||
| HL_5JCS_037 | GNRA wlth tandem sheared | ||
| HL_5JCS_072 | No text annotation | ||
| HL_5JCS_038 | No text annotation | ||
| HL_5JCS_039 | No text annotation | ||
| HL_5JCS_073 | No text annotation | ||
| HL_5JCS_040 | No text annotation | ||
| HL_5JCS_041 | No text annotation | ||
| HL_5JCS_042 | No text annotation | ||
| HL_5JCS_043 | No text annotation | ||
| HL_5JCS_074 | No text annotation | ||
| HL_5JCS_044 | No text annotation | ||
| HL_5JCS_075 | GNRA with extra cWW | ||
| HL_5JCS_082 | GNRA | ||
| HL_5JCS_076 | No text annotation | ||
| HL_5JCS_045 | No text annotation | ||
| HL_5JCS_046 | No text annotation | ||
| HL_5JCS_047 | No text annotation | ||
| HL_5JCS_048 | No text annotation | ||
| HL_5JCS_049 | GNRA | ||
| HL_5JCS_050 | GNRA | ||
| HL_5JCS_077 | No text annotation | ||
| HL_5JCS_051 | No text annotation | ||
| HL_5JCS_052 | No text annotation | ||
| HL_5JCS_078 | No text annotation | ||
| HL_5JCS_053 | No text annotation | ||
| HL_5JCS_054 | No text annotation | ||
| HL_5JCS_079 | No text annotation | ||
| HL_5JCS_083 | No text annotation | ||
| HL_5JCS_055 | No text annotation | ||
| HL_5JCS_056 | Pseudoknot geometry | ||
| HL_5JCS_057 | No text annotation | ||
| HL_5JCS_058 | No text annotation | ||
| HL_5JCS_059 | No text annotation | ||
| HL_5JCS_080 | No text annotation | ||
| HL_5JCS_060 | No text annotation | ||
| HL_5JCS_061 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5JCS_001 | Single stack bend with SAM intercalation | ||
| IL_5JCS_002 | Isolated non-canonical cWW pair | ||
| IL_5JCS_052 | No text annotation | ||
| IL_5JCS_053 | No text annotation | ||
| IL_5JCS_079 | No text annotation | ||
| IL_5JCS_003 | No text annotation | ||
| IL_5JCS_080 | No text annotation | ||
| IL_5JCS_054 | No text annotation | ||
| IL_5JCS_004 | No text annotation | ||
| IL_5JCS_005 | Single stack bend | ||
| IL_5JCS_006 | Tandem non-canonical cWW pairs | ||
| IL_5JCS_055 | Isolated non-canonical cWW pair | ||
| IL_5JCS_056 | No text annotation | ||
| IL_5JCS_081 | No text annotation | ||
| IL_5JCS_007 | No text annotation | ||
| IL_5JCS_008 | No text annotation | ||
| IL_5JCS_009 | Isolated non-canonical cWW pair | ||
| IL_5JCS_057 | Tandem non-canonical cWW pairs | ||
| IL_5JCS_082 | No text annotation | ||
| IL_5JCS_010 | No text annotation | ||
| IL_5JCS_058 | No text annotation | ||
| IL_5JCS_083 | No text annotation | ||
| IL_5JCS_084 | No text annotation | ||
| IL_5JCS_059 | No text annotation | ||
| IL_5JCS_011 | No text annotation | ||
| IL_5JCS_060 | Single bulged U | ||
| IL_5JCS_012 | No text annotation | ||
| IL_5JCS_061 | No text annotation | ||
| IL_5JCS_085 | No text annotation | ||
| IL_5JCS_013 | No text annotation | ||
| IL_5JCS_062 | No text annotation | ||
| IL_5JCS_063 | No text annotation | ||
| IL_5JCS_064 | No text annotation | ||
| IL_5JCS_014 | No text annotation | ||
| IL_5JCS_015 | Isolated non-canonical cWW pair | ||
| IL_5JCS_086 | Single bulged A | ||
| IL_5JCS_087 | Kink-turn | ||
| IL_5JCS_016 | No text annotation | ||
| IL_5JCS_017 | Single bulged A | ||
| IL_5JCS_065 | No text annotation | ||
| IL_5JCS_018 | No text annotation | ||
| IL_5JCS_066 | No text annotation | ||
| IL_5JCS_088 | No text annotation | ||
| IL_5JCS_019 | No text annotation | ||
| IL_5JCS_089 | No text annotation | ||
| IL_5JCS_067 | No text annotation | ||
| IL_5JCS_020 | No text annotation | ||
| IL_5JCS_021 | No text annotation | ||
| IL_5JCS_068 | No text annotation | ||
| IL_5JCS_022 | No text annotation | ||
| IL_5JCS_090 | Kink-turn | ||
| IL_5JCS_023 | No text annotation | ||
| IL_5JCS_024 | No text annotation | ||
| IL_5JCS_069 | No text annotation | ||
| IL_5JCS_025 | No text annotation | ||
| IL_5JCS_091 | No text annotation | ||
| IL_5JCS_026 | No text annotation | ||
| IL_5JCS_027 | No text annotation | ||
| IL_5JCS_028 | Single bulged U | ||
| IL_5JCS_029 | No text annotation | ||
| IL_5JCS_030 | No text annotation | ||
| IL_5JCS_031 | No text annotation | ||
| IL_5JCS_032 | No text annotation | ||
| IL_5JCS_092 | No text annotation | ||
| IL_5JCS_070 | No text annotation | ||
| IL_5JCS_093 | No text annotation | ||
| IL_5JCS_094 | No text annotation | ||
| IL_5JCS_033 | No text annotation | ||
| IL_5JCS_034 | Isolated non-canonical cWW with bulges | ||
| IL_5JCS_035 | Single stack bend with SAM intercalation | ||
| IL_5JCS_095 | No text annotation | ||
| IL_5JCS_071 | No text annotation | ||
| IL_5JCS_036 | Decoding loop related | ||
| IL_5JCS_072 | Single stack bend | ||
| IL_5JCS_073 | No text annotation | ||
| IL_5JCS_037 | Single stack bend | ||
| IL_5JCS_074 | No text annotation | ||
| IL_5JCS_038 | No text annotation | ||
| IL_5JCS_096 | No text annotation | ||
| IL_5JCS_039 | No text annotation | ||
| IL_5JCS_040 | Isolated non-canonical cWW pair | ||
| IL_5JCS_041 | No text annotation | ||
| IL_5JCS_042 | No text annotation | ||
| IL_5JCS_075 | No text annotation | ||
| IL_5JCS_043 | Isolated non-canonical cWW pair | ||
| IL_5JCS_044 | Tandem non-canonical cWW pairs | ||
| IL_5JCS_076 | No text annotation | ||
| IL_5JCS_045 | No text annotation | ||
| IL_5JCS_046 | No text annotation | ||
| IL_5JCS_047 | No text annotation | ||
| IL_5JCS_048 | No text annotation | ||
| IL_5JCS_049 | No text annotation | ||
| IL_5JCS_077 | No text annotation | ||
| IL_5JCS_050 | No text annotation | ||
| IL_5JCS_078 | No text annotation | ||
| IL_5JCS_097 | No text annotation | ||
| IL_5JCS_051 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5JCS_012 | No text annotation | ||
| J3_5JCS_005 | No text annotation | ||
| J3_5JCS_013 | No text annotation | ||
| J3_5JCS_001 | No text annotation | ||
| J3_5JCS_002 | No text annotation | ||
| J3_5JCS_006 | No text annotation | ||
| J3_5JCS_007 | No text annotation | ||
| J3_5JCS_003 | No text annotation | ||
| J3_5JCS_008 | No text annotation | ||
| J3_5JCS_014 | No text annotation | ||
| J3_5JCS_015 | No text annotation | ||
| J3_5JCS_009 | No text annotation | ||
| J3_5JCS_016 | No text annotation | ||
| J3_5JCS_010 | No text annotation | ||
| J3_5JCS_004 | No text annotation | ||
| J3_5JCS_011 | No text annotation | ||
| J4_5JCS_001 | No text annotation | ||
| J4_5JCS_002 | No text annotation | ||
| J6_5JCS_001 | No text annotation | ||
| J6_5JCS_004 | No text annotation | ||
| J6_5JCS_002 | No text annotation | ||
| J6_5JCS_003 | No text annotation | ||
| J6_5JCS_005 | No text annotation |
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